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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015912350.1_cds_XP_016462430.1_55661
CDS Infomation

[gene=LOC107785601] [db_xref=GeneID:107785601] [protein=LOW QUALITY PROTEIN: DNA-directed RNA polymerase 1, mitochondrial-like] [exception=unclassified translation discrepancy] [protein_id=XP_016462430.1] [location=complement(join(78424..78534,78761..78864,78974..79088,79424..79471,79586..79675,80508..80582,81426..81578,81781..81865,82485..82555,82725..82775,84505..84921,85009..85140,85241..85361,85363..85428,85909..85967,86082..86148,86313..86440,86575..86784,103511..104371))] [gbkey=CDS]
Sequence

ATGTGGAGATATATATCAAAACAAGCTTATTCAAGAAAATTCAGAAACAGCCATGATTCA
GCTTTATTGGGTTTTTCTCAGTGTTCTTCTTCTTTTGGAAAAACTAGACCTTTACAATGC
TTGTGTGAAGAAAGTACTACAAACCCCAACTTGGGTTTGTCTCAAAATTCAATCTTTTCT
AGAATTAGTAGAAAAGTTAGGCATTTAGAAGGCATTTGTGAAGAAAGTTCTAAAAATCCT
CACTTGGGTTTGTCTCAAAATTCACTCTTTTCAAGTGTTAAAGGGGATTTTCGTGTTTGC
GGTAAGAGGGGTAGTGGATCTTTAGGATTTTTGAGGAGTTATGGTAGTGCTGCAGAAGCT
ATTGCATCTACATCTGAAGAAGATATTGATGAAATTCAAGAATTAATAGAGGAAATGAAC
AAAGAAAATGAGGCTTTGAAGACCAATTTGCAACCAAAACAGCCTAAAACAATAGGTGGG
ATGGGGGTTGGGAAGTACAATTTGCTTAGGAGAAGGCAGATAAAGGTAGAAACTGAAGCG
TGGGAAGAGGCGGCGAAGGAGTATCAGGAGCTATTGATGGATATGTGCGAGCAAAAGCTG
GCACCAAACTTGCCTTACATGAAATCTTTGTTCTTGGGTTGGTTTGAGCCGTTGCGAGAT
GCTATAGCTGCTGAGCAGAAGTTGTGTGATGAAGGGAAGAACCGCGGGGCATATGCTCCG
TTCTTTGATCAATTGCCTGCTGAAATGATGGCTGTGATTACAATGCACAAGTTGATGGGT
TTGCTAATGACTGGTGGAGGAACTGGCAGTGCTAGAGTTGTACAAGCTGCTTCCCACATT
GGTGAAGCTATTGAGCATGAGGCCAGAATACATAGATTTTTGGAGAAGACCAAGAAAAGC
AATGCATTGAGTGGTGACTTGGAAGATACACCTGGTGATATAATGAAAGAAAGAGAGAGG
CTAAGGAAAAAAGTAAAAATTTTGATGAAGAAACAAAAGCTGCAGCAGGTTAGAAAGATA
GTGAAGCAGCAGGATGATGAAAAGCCTTGGGGCCAGGATAACCTTGTTAAGGTTGGGTGC
CGATTGATTCAGATATTAATGGAAACCGCCTATATACAGCCTCCAAATGATCAGTTAGAT
GATTGTCCACCAGATATTCGGCCAGCATTTGTGCACACCCTCAAAACTGTGGAAACAATG
AAAGGTAGCAGGAGATACGGTGTGATTCAATGTGATCCACTTGTTCGTAAAGGCCTTGAT
AAAACTGCTAGACACATGGTGATTCCATATATGCCGATGCTGGTTCCTCCACAGAGTTGG
TTAGGGTATGACAAAGGTGCNAAAAATGGAGAAAAAGAATTCAGGTCTTGTTTTTCACTT
ATATATTTTGGGGTTCAGGCACTTGACACTCTTGGTAATACCAAATGGAGGTTGAATAGA
AAGGTACTTGGCATAGTAGACAGAATATGGGCTAGTGGAGGTCGCCTTGCTGACTTAGTC
GACAGGGAAGATGTACCTTTACCAGAAGAGCCGGACGCAGAAGATGAAGCACAAATCAGG
AAATGGAAGTGGAAAGTTAAAGGTGTGAAAAAAGAGAACTGCGAGAGGCATTCTCAGCGG
TGTGATATAGAACTCAAACTAGCTGTTGCACGGAAAATGAAGGATGAAGATGGTTTTTAT
TATCCACATAATCTTGATTTTCGTGGTCGTGCATACCCTATGCACCCGTATTTGAACCAT
CTTGGCTCTGATTTGTGCCGTGGAATCCTCGAATTCGCGGAGGGGCGCCCACTTGGAAAG
TCCGGTTTACGCTGGCTGAAGATACATCTAGCGAATGTATACGGTGGTGGTGTTGATAAG
TTATCATATGAAGGTCGTGTAGCATTCAGTGAAAACCATGTGGAGGATATTTTTGACTCT
GCAGAAAGGCCACTGGAAGGAAAGCGGTGGTGGTTGGGGGCGGAAGATCCTTTTCAATGC
TTAGCAACATGTATTAATATAGCTGAAGCATTGAGAAGCCCGTCTCCAGAGACTGCTATA
TCTTATATGCCCATTCACCAGGATGGTTCGTGCAATGGGCTACAACATTATGCTGCTCTT
GGTAGGGATACGTTAGGAGCAGCTGCAGTCAATCTTGTTGCTGGAGACAAGCCTGCTGAT
GTTTACTCTGGAATTGCTGCCCGAGTTCTTGATATTATGAAGAGAGATGCAGCTAAAGAT
CCAGCAAATGATCCAAATGTGATGCGTGCCAGGCTGTTAATTAACCAGGTGGACAGGAAG
TTGGTCAAGCAAACAGTTATGACATCAGTGTATGGTGTCACGTATATTGGTGCTCGCGAC
CAAATCAAGAGAAGATTGAAGGAGCGTGGTGTTATTGAAGATGATAATGAGTTGTTTGCA
GCAGCTTGCTATGCAGCAAAAACCACCTTGACTGCCTTAGGAGAGATGTTTGAAGCTGCT
AGAAGTATCATGAGTTGGCTTGGAGATTGTGCAAAGATTATCGCCATGGAAAACCATCCT
GTACGATGGACTACTCCACTTGGACTTCCTGTGGTGCAACCTTACCGCAAATTAGGAAGG
CATCTTATTAAAACTTCCCTTCAGATTTTGACATTACAGCGTGAAACAGATAAGGTAATG
GTTAAGCGACAGAGAACAGCATTCCCTCCAAATTTCGTTCACTCTCTCGATGGCTCCCAC
ATGATGATGACTGCCATTGCCTGCAAAGAATCTGGCTTAAGTTTTGCAGGGGTGCATGAT
TCATACTGGACACATGCCAGTGATGTTGATCAAATGAACAAAATCTTGAGAGAGAAATTT
GTTGAACTCTACGACGCACCCATATTGGAAAATTTACTGGAGAGTTTTCAGCAGTCATTC
CCCGACTTGCAATTTCCTCCCTTACCAGAGCGGGGTGATTTCGATTTAAGAGAAGTTTTG
GAATCTCCCTACTTTTTCAACTAG

Peptide Sequence

PEP ID

XP_016462430.1
PEP Infomation

PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 1, mitochondrial-like [Nicotiana tabacum]
Sequence

MWRYISKQAYSRKFRNSHDSALLGFSQCSSSFGKTRPLQCLCEESTTNPNLGLSQNSIFS
RISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGSAAEA
IASTSEEDIDEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQIKVETEA
WEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAP
FFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFLEKTKKS
NALSGDLEDTPGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGC
RLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLD
KTARHMVIPYMPMLVPPQSWLGYDKGAKNGEKEFRSCFSLIYFGXVQALDTLGNTKWRLN
RKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQ
RCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLG
KSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQ
CLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPA
DVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGAR
DQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENH
PVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGS
HMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQS
FPDLQFPPLPERGDFDLREVLESPYFFN

Transcript Sequence

Gene sequence data has not been registered.